GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low memory use and caching of records. Support for external FASTA files.

A Ruby client for GGGenome the Ultrafast sequence search

Identify causative mutations in a model genome from NGS reads using the NGM method.

Identify causative mutations in a model genome from NGS reads using the NGM method.

Library for visualizing genomic regions

Encode any message string into a DNA sequence

Enables programmatic parsing of HMMER version 3 reports

Parse PFAM HMM definition files so that the models can be accessible programmatically

Hydropathy scale for BioRuby

Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly useful state.

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data formats such as JSON, XML, GFF3, etc., into RDF."

a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate suite.

Phylogenetic analysis using IQ-Tree via BioRuby

A bioruby plugin for calculating the isoelectric point of a protein

Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs module in Biopython

Basic wrapper for the Kallistio Mapper

Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package lumiHumanIDMapping

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.

This biogem is built around Krona, a flashy way of representing hierarchical data.

This is very scrappy at the moment, and will need to be seriously cleaned up. It does what I need it to do for now. I'll fix it up in the coming weeks. Promise :)