A systems integration framework, built to bring the benefits of configuration management to your entire infrastructure.

software to fetch configuration from network devices and store them

metar-parser is a ruby gem that downloads weather reports, parses them and formats reports. It also provides weather station listings and info (e.g. country, latitude and longitude). Reports can be fully localized (currently Brazilian Portuguese, English, German and Italian are available).

Photocopier provides FTP/SSH adapters to abstract away file and directory copying.

Microbial Genomes Atlas

https://github.com/bsm/bfs.rb

Downloads BLAST databases from NCBI. Database files (volumes) are downloaded in parallel; number of threads to use is determined automatically. Database files are verified and extracted upon download.

Data sources like PubMed, Entrez Gene, or Gene Ontology

PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.

Relaton3gpp: Ruby XMLDOC impementation.

Vagrant is a tool for building and distributing virtualized development environments.