Accept payments using Beanstream and Ruby

Compute Solutions to Sets of Equations Given Certain Values

bell_pepper is a low-level wrapper around the BELS API.

Show graph on benchmark_driver using charty.gem

Gem to convert from Ancient Greek Beta Code to Unicode characters and vice versa

# better-initialize A friendlier, dependency-free initialize method for ruby objects. ## Usage Gemfile: gem 'better-initialize', github: 'huned/better-initialize' Code: require 'better_initialize' class Pizza include BetterInitialize attr_accessor :size, :topp...

IPAddr enhancements for network management.

Command-line tools to work with Bibi, incliding bibi publish which uploads EPUB files to S3 and make them readable via web using Bibi a EPUB reader application.

simple binary file parser.

Data mining and machine learning algorithms for JRuby

Provides BioSQL support for BioRuby.

BioRuby BLAST XMLParser plugin: a plugin of BioRuby BLAST XML result parser by using the XMLParser extension. This was formerly a part of the BioRuby core ("bio" gem) and split to this gem because of the external XMLParser dependency.

BioRuby executables is a collection of miscellaneous utilities for bioinformatics that were formerly part of the BioRuby core ("bio" gem). Because of reducing complexity, they were moved to this gem.

a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate suite.

Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs module in Biopython

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server were still alive. It overrides methods and objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KE...

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptides in Plasmodium falciparum. This is an implementation of that algorithm.

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutat...

Wrapper of samtools for ruby. This project was born from the need to add support of BAM files to the gee_fu genome browser (http://github.com/danmaclean/gee_fu).

BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.