Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs module in Biopython

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server were still alive. It overrides methods and objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp).

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptides in Plasmodium falciparum. This is an implementation of that algorithm.

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutations.

Wrapper of samtools for ruby. This project was born from the need to add support of BAM files to the gee_fu genome browser (http://github.com/danmaclean/gee_fu).

BioRuby Shell is a command line interface on BioRuby open source bioinformatics library. It provides easy-to-use analysis environment for bioinformatics.

Shogi library

A bioruby plugin for interaction with the transmembrane predictor TMHMM

Mostly drop-in replacement for Logger with a more robust log rotation facility

A library for range of hours in bits.

Использование инфоблоков 1С-Битрикс в Ruby On Rails проектах

Bixby Common files/libs

A simple client for the BlaBlaCar API (valid credentials required)

The blueline_services gem is a ruby gem used for submitting background check requests to Blueline Services

Ruby SDK for BlueVia allows you to use the BueVia public API from your Ruby application using just few lines of code.

given a hash of lambdas, runs and compares the amount of time each implementation takes

Bok Choy is a low-level wrapper around the BHLnames API.

Support Chinese's hola.

Used to sync data from Bookafy