bio-sambamba

Full description goes here

Note: this software is under active development!

    rake build
    rake install

In order to use the gem, you also need sambamba tool installed (version >= 0.2.6).

If you use Debian, you can download a package for your architecture from github downloads.

Otherwise, you need to install DMD compiler.

• On Mac OS X you can install homebrew package manager, then install dmd easily with

    brew install dmd

• On Arch Linux you can use pacman to install dmd

    pacman -S dmd libphobos

• clone sambamba repository and compile the tool

    git clone --recursive https://github.com/lomereiter/sambamba.git
    cd sambamba/
    make

• place the executable file build/sambamba to somewhere in your $PATH, for example:

    cp build/sambamba /usr/local/bin

    require 'bio-sambamba'

The API doc is online. For more code examples see the test files in the source tree.

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/lomereiter/bioruby-sambamba

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

If you use this software, please cite one of

• BioRuby: bioinformatics software for the Ruby programming language
• Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

This Biogem is published at #bio-sambamba

Copyright (c) 2012 Artem Tarasov. See LICENSE.txt for further details.